Dreamy Japanese Cotton Cheesecake Cupcakes

As seen in Sweet Treats to Satisfy Any Craving.

These Japanese cotton cheesecake cupcakes are like clouds—they just melt as soon as you bite in. Start by folding soft, fluffy egg whites into a sweet cream cheese base. A touch of vanilla and a sprinkle of salt keep the flavor balanced, while a slow bake turns out cupcakes with crackly golden tops. They're a real crowd-pleaser at parties and taste best the day you make them. Want to go all out? Add whipped cream or some fruit on top. Keep leftovers in a sealed container and they’ll stay moist for a couple days.

Lindsey
Created By Lindsey
Last updated on Mon, 23 Jun 2025 23:12:12 GMT
A cupcake topped with white frosting. Save Pin
A cupcake topped with white frosting. | cookbing.com

Sink your teeth into these cloud-like Japanese cotton cheesecake cupcakes. Each bite is soft and airy with a gentle hint of cheesy flavor and just the right amount of sweetness. They're a crowd-pleaser that impress friends and family but aren't a hassle to throw together.

The first time I made these was totally on a whim for a brunch and wow, they vanished in no time. Now, I bring them to every birthday and potluck I go to.

Dreamy Ingredients

  • Eggs: three large eggs, separated, should be room temperature for the best fluff
  • Vanilla extract: a little gives lovely warm vibes; real stuff is best if you can find it
  • Salt: lifts and pops all those gentle flavors
  • All-purpose flour: gives shape and structure; sift it in for extra lightness
  • Unsalted butter: makes everything richer and the crumb softer—fresh and good quality is the way to go
  • Milk: brings moisture and a super tender crumb; whole milk works like magic
  • Sugar: classic white sugar keeps things sweet and helps make cupcakes tender
  • Cream cheese: the signature tang and creamy feel; a full-fat brick delivers the dreamiest texture

Simple Step-by-Step

Let Them Cool Off:
Wait about 10 minutes for the cupcakes to finish settling in the pan. Then set them on a cooling rack and let them chill out all the way before you peel off the wrappers or serve.
Sift and Fold in Dry:
With a fine sieve, sprinkle flour and salt (a little at a time) on top of your wet mix. Use a spatula to gently fold until you don't see dry streaks. Take your time so you don’t knock out all the airiness you worked so hard for.
Blend in Yolks:
One at a time, add your egg yolks, mixing well after each. This helps keep the batter thick and smooth.
Bake:
Fill your cupcake liners up about two-thirds. Slide the tray into your preheated oven and bake 20-25 minutes. You'll know they're done when the tops are golden and a toothpick poked in the middle comes out mostly clean.
Get Pan and Oven Ready:
Fire up your oven to 320 F/160 C right away. Line your cupcake pan with liners that fit just right so you can pop them out later with no problem.
Whip the Whites:
In a bone-dry bowl, beat your egg whites until soft peaks appear. Stand or handheld mixer works fine. You want the peaks to curl back a bit—this gives the cupcakes their dreamy lift.
Make the Base:
In your mixing bowl, smash together butter, cream cheese, sugar, and milk until crazy smooth. Medium speed with a hand mixer is easiest and you don't want any lumps.
Fold In Egg Whites:
Drop in a third of the fluffy egg whites and gently mix them in—don’t stir too hard. Then add the rest and softly fold 'til it’s all super pale and light. Take it easy so things stay airy.
A cupcake topped with white frosting and a dusting of powdered sugar. Save Pin
A cupcake topped with white frosting and a dusting of powdered sugar. | cookbing.com

There’s just something magical about how those whipped egg whites fluff up the crumb. One year my kids and I made a winter batch, topped them with powdered sugar and dubbed them snow cupcakes—hands down one of my favorite family moments.

Keeping Them Fresh

  • Pop any extras into a tightly sealed box in your fridge to keep them from drying out
  • Let them warm back up to almost room temp before eating for ultimate softness
  • They're at their best the first day but I've kept leftovers tasty for two days without fuss

Swap Ideas

  • Try mascarpone instead of cream cheese if you want it a touch sweeter
  • Lemon or orange zest pepped into the batter gives a fresh zing
  • Go for almond extract instead of vanilla for a new vibe

Ways to Enjoy

  • A snowy sprinkle of powdered sugar keeps things classic
  • Spoon on whipped cream or pile on some berries for a treat that looks fancy
  • Top with a little mint to dress them up for tea time or a special day
Cupcake finished with white frosting. Save Pin
Cupcake finished with white frosting. | cookbing.com

Cultural Backstory

Japanese cotton cheesecake puts an airy spin on classic cheesecake by blending French souffle methods and lighter Asian sweets. Loved across Japan, its soft texture is a big hit in cafes and shops. Making them into cupcake form is a fun way to serve—no knife needed, just grab and go.

Common Questions

→ How do I get that super light texture in these cupcakes?

Make sure your egg whites are whipped up well and gently mix them into the rest. This keeps the batter from going flat and makes everything feel super airy.

→ Is it okay to mix in different flavors?

Go for it. Try some orange or lemon zest, or a splash of almond for something different than standard vanilla.

→ Why do the tops split sometimes?

If your egg whites are mixed too much, your oven runs hot, or you fill liners too full, the cupcakes might crack. Fold softly and don't turn up the heat too high.

→ Can I prep these ahead of time?

They're definitely tastiest fresh, but you can stash extras for up to 2 days. Add a little whipped cream or fruit when you're ready to serve.

→ How should I serve them up for the best taste?

You can chill them or leave 'em out to come to room temperature. Sprinkle powdered sugar, pile on whipped cream, or toss some berries for a fun finish.

Japanese Cotton Cheesecake Cupcakes

Sink your teeth into these soft, fluffy cupcakes packed with gentle sweetness and a creamy vibe.

Preparation Time
15 Minutes
Cooking Time
25 Minutes
Overall Time
40 Minutes
Created By: Lindsey

Recipe Type: Desserts

Skill Level: Moderate

Type of Cuisine: Japanese

Serves: 12 Portions (12 cupcakes)

Diet Preferences: Suitable for Vegetarians

What You'll Need

→ Batter

01 1/2 teaspoon vanilla extract
02 1/4 teaspoon salt
03 1/2 cup all-purpose flour
04 3 large eggs, separated
05 1/4 cup unsalted butter, melted
06 1/4 cup whole milk
07 1/2 cup granulated sugar
08 1 cup cream cheese, make sure it’s soft

Step-by-Step Directions

Step 01

Once baking’s done, let the cupcakes chill out in the muffin tin for about 10 minutes. Then move 'em over to a wire rack so they cool off totally.

Step 02

Toss the tin in the oven and bake for around 20 to 25 minutes. You’re aiming for tops that look just a little golden. Check with a toothpick—if it comes out clean, you’re good.

Step 03

Fill up each cupcake liner about 2/3 full of batter. No need to be exact—just don’t overfill or you’ll end up with a mess.

Step 04

Sift in the flour and salt slowly while you fold gently. Take it easy so the batter stays puffy, not flat.

Step 05

Now, take those whipped egg whites and carefully fold them in with the cream cheese mixture. Don't overmix—just go until it’s mixed together.

Step 06

In another bowl, beat the egg whites until you see soft peaks that hold their shape but still look a bit glossy.

Step 07

Drop the egg yolks in one by one into your smooth cream cheese mixture, stirring well each time.

Step 08

Grab your mixing bowl and beat cream cheese, sugar, milk, and melted butter together. Keep going until it turns out super smooth—no lumps.

Step 09

Crank your oven to 320°F (160°C). Set out 12 cupcake liners in a regular muffin tin.

Helpful Notes

  1. A bit of lemon zest will really brighten up the batter.
  2. Top with some whipped cream or fresh berries if you want a little extra kick.
  3. They taste best day one. If you’ve got leftovers, pop 'em in an airtight box and finish within two days.

Essential Tools

  • 12-slot muffin tin
  • Cupcake liners
  • A couple of mixing bowls
  • Whisk or hand mixer
  • Rubber spatula
  • Wire rack for cooling

Allergen Warnings

Always review the ingredient labels for allergens or consult a healthcare professional with concerns.
  • Has dairy, eggs, and wheat—so not safe for folks with those allergies.

Nutritional Info (Per Portion)

Nutritional values are approximations and shouldn’t be viewed as customized health guidance.
  • Calories: 150
  • Fat Content: 9 grams
  • Carbohydrates: 15 grams
  • Protein Content: 3 grams